science
Ci sono 8 articoli con tag science (questa è la pagina 1 di 1).
NATURE, SCIENCE IN ALL-YOU-CAN-READ FORMAT
All research papers from Nature will be made free to read in a proprietary screen-view format that can be annotated but not copied, printed or downloaded, the journal’s publisher Macmillan announced on 2 December.
via Nature: news
scientific publications have to make transition to open science
“An inherent principle of publication is that others should be able to replicate and build upon the authors’ published claims. Therefore, a ondition of publication in a Nature journal is that authors are required to make materials, data and associated protocols available to readers promptly on request.”
— Nature, Availability of data and materials
OpenSource.com Magazine last June 12nd published an interesting (and promising) article on Nature Methods, one of the most respected scientific publications in the world, shifting with decision to an ‘open science’ model for its articles approval process…
a game changer
Researcher Natalia Ivanova was parsing this data when she noticed something strange: several bacteria had really short genes, around 200 nucleotides long, a far cry from the more typical 800-900 nucleotide length she was expecting. Short genes mean short proteins, and in this case, seemingly nonfunctional ones. The only way to make it coherent was if “stop” codons didn’t actually mean “stop”.
Ivanova experimented computationally with various codon reassignments, and ultimately found that things looked a lot more normal if “opal” was translated as a glycine amino acid. In other words, “the same word means different things in different organisms,” says Eddy Rubin, JGI’s Director. The microbial world is multilingual.
Wired, Is DNA multilingual? →
AllBio Congress – Florence 2014
We’ve finally published the website regarding this year’s AllBio conference, entitled:
Broadening the Bioinformatics Infrastructure to Unicellular, Animal, and Plant Science
To know more, and register (for free!) please point your browsers to:
the Data Science workflow
via Josh Willis’s talk From the Lab to the Factory: Building a production machine learning infrastructure.
The homogenization of scientific computing, or why Python is steadily eating other languages’ lunch
Speaking only for myself, I’ve now arrived at the point where around 90 – 95% of what I do can be done comfortably in Python. So the major consideration for me, when determining what language to use for a new project, has shifted from what’s the best tool for the job that I’m willing to learn and/or tolerate using? to is there really no way to do this in Python? By and large, this mentality is a good thing, though I won’t deny that it occasionally has its downsides. For example, back when I did most of my data analysis in R, I would frequently play around with random statistics packages just to see what they did. I don’t do that much any more, because the pain of having to refresh my R knowledge and deal with that thing again usually outweighs the perceived benefits of aimless statistical exploration.
Conversely, sometimes I end up using Python packages that I don’t like quite as much as comparable packages in other languages, simply for the sake of preserving language purity. For example, I prefer Rails’ ActiveRecord ORM to the much more explicit SQLAlchemy ORM for Python–but I don’t prefer to it enough to justify mixing Ruby and Python objects in the same application. So, clearly, there are costs. But they’re pretty small costs, and for me personally, the scales have now clearly tipped in favor of using Python for almost everything. I know many other researchers who’ve had the same experience, and I don’t think it’s entirely unfair to suggest that, at this point, Python has become the de facto language of scientific computing in many domains. If you’re reading this and haven’t had much prior exposure to Python, now’s a great time to come on board!
Tal Yarkoni ☞ [citation needed]
scientific bad poster bingo
A “game” to play at your next scientific (or schoolar) conference. If you win ALL the times then point your browser to Better Posters to get some insightful tips & tricks on the art of visual communication…